118 Commits

Author SHA1 Message Date
Timothy Kassis
7e3fae3ad1 Add support to LaminDB v1.67.0 2025-10-31 11:39:54 -07:00
Timothy Kassis
97c03a11e5 Add Claude Code installation instructions 2025-10-31 11:21:01 -07:00
Timothy Kassis
b6bb261a71 Consolidate getting started 2025-10-31 09:49:48 -07:00
Timothy Kassis
c0de4269c0 Merge pull request #3 from K-Dense-AI/orion/add-hosted-mcp
Update README to include quick installation instructions for Cursor u…
2025-10-30 16:12:15 -07:00
Haoxuan "Orion" Li
aa5018612f Update README to include quick installation instructions for Cursor users and clarify MCP server usage across various clients. 2025-10-30 15:01:20 -07:00
Timothy Kassis
f12f9c2904 Enhance README by adding a call to action for users to star the repository, promoting visibility and ongoing maintenance. 2025-10-28 17:57:09 -07:00
Timothy Kassis
55af02f2d4 Add star history 2025-10-28 17:52:44 -07:00
Timothy Kassis
346010a1bf Add Markitdown skill to read all sorts of documents v1.66.0 2025-10-28 16:31:01 -07:00
Timothy Kassis
5b37b62147 Update README to reflect the increase in equivalent tools from 500 to 1002 2025-10-28 15:54:00 -07:00
Timothy Kassis
82901e9fbe Add hypothesis generation using HypoGeniC and HypoRefine v1.65.0 2025-10-28 12:53:43 -07:00
Timothy Kassis
752c32949b Add citation 2025-10-28 10:47:44 -07:00
Timothy Kassis
981823a71a Add ScholarEval as a thinking framework v1.64.0 2025-10-28 10:45:34 -07:00
Vinayak Agarwal
26d4fde324 Updated skill descrtipotions to resolve possible conflicts in their use 2025-10-26 18:52:50 -07:00
Timothy Kassis
1f03feda5c Add protocols.io integration v1.63.0 2025-10-26 11:09:03 -07:00
Timothy Kassis
44285238c4 Fix context initialization by using AGENTS.md instead of AGENT.md v1.62.0 2025-10-26 10:18:45 -07:00
Vinayak Agarwal
af246ac562 Revise literature review template to enhance structure and clarity, including expanded sections for authors' affiliations, review types, and detailed methodology. Update abstract format to include background, objectives, methods, results, and conclusions. Introduce new subsections for protocol registration, quality assessment, and knowledge gaps, ensuring comprehensive guidance for systematic reviews. 2025-10-25 23:30:34 -07:00
Timothy Kassis
04d528c4bc Added support for NeuroKit2 v1.61.0 2025-10-25 21:38:31 -07:00
Timothy Kassis
b83942845c Support for aeon for time-series analysis and machine learning 2025-10-25 21:25:50 -07:00
Timothy Kassis
6cefe6f4cc Add support for PyLabRobot for lab automation 2025-10-25 21:23:47 -07:00
Timothy Kassis
a5c2ed9bb6 Add literature review skill v1.60.0 2025-10-25 10:55:36 -07:00
Timothy Kassis
295370a730 Update README.md to replace downloads and workflows badges with an equivalent tools badge for improved clarity. 2025-10-25 10:38:43 -07:00
Timothy Kassis
4fde8cb6de Enhance README.md by adding a downloads badge to track total downloads of the project. 2025-10-24 19:41:22 -07:00
Timothy Kassis
564bd39835 Add support for HistoLab v1.59.0 2025-10-24 13:41:06 -07:00
Timothy Kassis
7240da6e6c Add support for PathML 2025-10-24 13:40:40 -07:00
Timothy Kassis
1871693348 Enhance README.md with detailed instructions for various workflows, emphasizing the importance of organized output and the creation of comprehensive documentation and visualizations. 2025-10-24 09:30:56 -07:00
Timothy Kassis
0e03bbcf38 Update readme 2025-10-24 09:23:19 -07:00
Timothy Kassis
ca6fd369d7 Add DrugBank access v1.57.0 2025-10-24 09:04:43 -07:00
Timothy Kassis
808fa11206 Add DataCommons which enables scientists to programmatically access nodes in the Data Commons knowledge graph. 2025-10-24 09:04:27 -07:00
Timothy Kassis
d923063309 Change license to MIT allowing commercial use! v1.56.0 2025-10-23 20:48:01 -07:00
Timothy Kassis
43dc67a316 Version bump v1.55.0 2025-10-23 10:02:31 -07:00
Timothy Kassis
ee73143b53 Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event 2025-10-23 10:02:16 -07:00
Timothy Kassis
b1df506eba Add support for PyHealth making healthcare AI simpler and more powerful 2025-10-23 09:50:07 -07:00
Timothy Kassis
bb1c9f4573 Add support for PyDicom 2025-10-23 09:35:46 -07:00
Timothy Kassis
6cb25aea28 Add SimPy a process-based discrete-event simulation framework 2025-10-23 09:26:44 -07:00
Timothy Kassis
92b4e024d1 Addition of ESM, SHAP, scvi-tools...and much more! v1.54.0 2025-10-23 09:12:41 -07:00
Timothy Kassis
3fbd9ba6a9 Add utility skill to get system resources 2025-10-23 09:12:01 -07:00
Timothy Kassis
62ddd1296c Add ESM3 and ESM C models protein models 2025-10-23 09:10:34 -07:00
Timothy Kassis
a11ca9c100 Add sciv-tools providing models for single cell sequencing 2025-10-23 09:09:18 -07:00
Timothy Kassis
db2cedb2fb Add SHAP for model explainability 2025-10-23 09:08:27 -07:00
Timothy Kassis
87a608730c Add support for bioRxiv database search and paper downloading 2025-10-23 08:51:45 -07:00
Timothy Kassis
0943c243bb Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway. v1.53.0 2025-10-22 14:59:27 -07:00
Timothy Kassis
0b5a648e98 Add Paper2Web v1.52.0 2025-10-22 08:50:06 -07:00
Timothy Kassis
77822efeed Improved Biomni support v1.51.0 2025-10-22 08:38:06 -07:00
Timothy Kassis
71a3c3750f Enhance README with detailed examples for complex scientific workflows across drug discovery, bioinformatics, and clinical genomics, showcasing multi-step processes and integration of various tools. 2025-10-22 08:24:40 -07:00
Timothy Kassis
9584469988 Refactor release notes generation in workflow to remove version header and streamline output 2025-10-22 08:21:43 -07:00
Timothy Kassis
685da0082c Add automatic releases v1.50.0 2025-10-22 08:17:56 -07:00
Timothy Kassis
08608e824a Use Agent.md 2025-10-21 17:35:37 -07:00
Vinayak Agarwal
c67e840088 Added new skills to create claude.md files for better skill use 2025-10-21 15:06:34 -07:00
Timothy Kassis
000a45c0e9 Apply best practices 2025-10-21 12:50:07 -07:00
Timothy Kassis
998a514f74 Update biopython skill 2025-10-21 10:47:34 -07:00