162 Commits

Author SHA1 Message Date
Timothy Kassis
7e8deebf96 Add support for Qiskit from IBM: software stack for quantum computing and algorithms research. Build, optimize, and execute quantum workloads at scale. v2.6.0 2025-11-30 08:46:41 -05:00
Timothy Kassis
7763491813 Add support for PennyLane: a cross-platform library for quantum computing, quantum machine learning, and quantum chemistry. 2025-11-30 08:27:24 -05:00
Timothy Kassis
16e47a1755 Add support for Cirq: library for writing, manipulating, and optimizing quantum circuits, and then running them on quantum computers and quantum simulators. 2025-11-30 08:02:58 -05:00
Timothy Kassis
a077cee836 Add support for QuTiP: an open-source software for simulating the dynamics of open quantum systems. 2025-11-30 07:46:17 -05:00
Timothy Kassis
7caef7df68 Fix Reactome database nesting v2.5.1 2025-11-30 06:28:41 -05:00
Timothy Kassis
6ac2a15e39 Add support for GeoPandas v2.5.0 2025-11-27 18:57:26 -05:00
Timothy Kassis
41f272c2bd Add Plotly support 2025-11-27 18:47:08 -05:00
Timothy Kassis
02574ba19d Merge pull request #10 from K-Dense-AI/add_adaptyv_integration
Add support for Adaptyv for protein design
v2.4.0
2025-11-24 19:53:28 -05:00
Timothy Kassis
ea638c5618 Add support for Adaptyv for protein design 2025-11-24 19:52:45 -05:00
Timothy Kassis
8e7a791871 Merge pull request #8 from alperyilmaz/patch-1
updated CHEMBL function calls
2025-11-23 04:54:15 -08:00
Alper Yilmaz
3bb0ee77be updated CHEMBL function calls
https://bioservices.readthedocs.io/en/latest/references.html#module-bioservices.chembl describes changes to functions after 1.6.0

also, get_compounds_by_chemblId fails when tested
2025-11-21 12:52:30 +03:00
Timothy Kassis
e5fc882746 Merge pull request #6 from K-Dense-AI:open_alex_integration
Add support for OpenAlex
v2.3.0
2025-11-19 13:39:08 -08:00
Timothy Kassis
65b39d45d6 Add support for OpenAlex 2025-11-19 13:38:32 -08:00
Timothy Kassis
c078c98ad2 Add Perplexity search v2.2.0 2025-11-16 16:16:21 -08:00
Timothy Kassis
2e80732340 Add uv installation instructions v2.1.1 2025-11-16 15:36:33 -08:00
Timothy Kassis
2fc3e6a88e Updated installation instructions for all skills to always use uv pip install 2025-11-16 15:34:52 -08:00
Timothy Kassis
d94f21c51f Add support for fluidsim for computational fluid dynamics v2.1.0 2025-11-13 19:46:29 -08:00
Timothy Kassis
19c0b390ee Merge pull request #5 from K-Dense-AI/refactor_skills
Refactor skills into a single installable plugin
v2.0.0
2025-11-13 19:21:02 -08:00
Timothy Kassis
54cab8e4b5 Update readme to clarify refactoring 2025-11-13 19:20:09 -08:00
Timothy Kassis
ad2dfc3446 Update readme 2025-11-13 19:17:42 -08:00
Timothy Kassis
63f257d81e Consolidate plugins 2025-11-13 18:57:02 -08:00
Timothy Kassis
8be6c6c307 Consolidate skills 2025-11-13 18:50:42 -08:00
Timothy Kassis
cc99fdb57d Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally v1.80.0 2025-11-10 10:57:05 -08:00
Timothy Kassis
50fdaf1b04 Add Slack link 2025-11-10 09:24:36 -08:00
Timothy Kassis
82663ee1de Bump version v1.70.1 2025-11-07 09:37:59 -08:00
Timothy Kassis
2873d0e39d Improve the EDA skill 2025-11-07 09:37:14 -08:00
Timothy Kassis
0e4939147f Link to examples 2025-11-06 17:05:17 -08:00
Timothy Kassis
5b7081cbff Add examples 2025-11-06 17:04:04 -08:00
Timothy Kassis
ffad3d81b0 Improve the EDA skill 2025-11-04 17:25:06 -08:00
Timothy Kassis
1225ddecf1 Add support for both geniml and gtars v1.70.0 2025-11-04 10:22:03 -08:00
Timothy Kassis
4ad4f9970f Improve the scikit-learn skill 2025-11-04 10:11:46 -08:00
Timothy Kassis
63a4293f1a Add support for the Denario AI scientist v1.69.0 2025-11-03 17:04:20 -08:00
Timothy Kassis
f124e28509 Update the PyOpenMS skill 2025-11-03 16:55:01 -08:00
Timothy Kassis
c56fa43747 Improve the Hugging Face transformers skill 2025-11-03 16:44:15 -08:00
Timothy Kassis
86d8878eeb Improve the astropy skill 2025-11-03 16:34:14 -08:00
Timothy Kassis
d57129ca3f Bump version v1.68.1 2025-11-03 16:21:47 -08:00
Timothy Kassis
537edff2a1 Improve the arboreto skill 2025-11-03 16:21:26 -08:00
Timothy Kassis
6ddea4786e Improve the anndata skill 2025-11-03 16:09:01 -08:00
Timothy Kassis
094d5aa9f1 Improve the aeon skill 2025-11-03 15:59:29 -08:00
Timothy Kassis
862445f531 Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training. v1.68.0 2025-11-02 14:54:16 -08:00
Timothy Kassis
b8c4d2bae1 Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning. 2025-11-02 14:52:06 -08:00
Timothy Kassis
27d6ee387f Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation. 2025-11-02 14:43:20 -08:00
Timothy Kassis
f32b3f8b42 Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python. 2025-11-02 14:30:20 -08:00
Timothy Kassis
ed2d1c4aeb Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs. 2025-11-02 14:19:20 -08:00
Timothy Kassis
7e3fae3ad1 Add support to LaminDB v1.67.0 2025-10-31 11:39:54 -07:00
Timothy Kassis
97c03a11e5 Add Claude Code installation instructions 2025-10-31 11:21:01 -07:00
Timothy Kassis
b6bb261a71 Consolidate getting started 2025-10-31 09:49:48 -07:00
Timothy Kassis
c0de4269c0 Merge pull request #3 from K-Dense-AI/orion/add-hosted-mcp
Update README to include quick installation instructions for Cursor u…
2025-10-30 16:12:15 -07:00
Haoxuan "Orion" Li
aa5018612f Update README to include quick installation instructions for Cursor users and clarify MCP server usage across various clients. 2025-10-30 15:01:20 -07:00
Timothy Kassis
f12f9c2904 Enhance README by adding a call to action for users to star the repository, promoting visibility and ongoing maintenance. 2025-10-28 17:57:09 -07:00