skills/claude-scientific-skills
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  • a31cf4dd97 Merge pull request #35 from fedorov/add-idc-clean main Timothy Kassis 2026-01-25 10:17:32 -08:00
  • 79a598e060 Register imaging-data-commons skill in the marketplace Andrey Fedorov 2026-01-23 17:10:02 -05:00
  • 1d306c59cf Update to include new index available from idc-index Andrey Fedorov 2026-01-23 17:05:50 -05:00
  • b71988fcdf Added Imaging Data Commons skill Andrey Fedorov 2026-01-22 18:26:30 -05:00
  • cd537c1af6 Replace all instances of Sonnet to Opus Timothy Kassis 2026-01-21 09:16:34 -05:00
  • c5413a6b5c Remove Biomni due to incompatibilities Timothy Kassis 2026-01-21 09:11:38 -05:00
  • 497232fbc1 Merge pull request #32 from K-Dense-AI/add-open-source-acknowledgements Timothy Kassis 2026-01-15 20:44:16 -08:00
  • 2a42585d11 docs: fix README text symbols Haoxuan "Orion" Li 2026-01-15 16:05:02 -08:00
  • 8578c44724 Merge branch 'main' into add-open-source-acknowledgements Haoxuan "Orion" Li 2026-01-15 16:01:38 -08:00
  • b4e35897ae docs: add acknowledgements and sponsor information on open source projects referenced Haoxuan "Orion" Li 2026-01-15 16:00:45 -08:00
  • 25f29ac3db Update readme Timothy Kassis 2026-01-15 12:49:04 -08:00
  • bbe8a15cf7 Update README.md to include a link to a detailed comparison of K-Dense Web and Claude, and enhance contribution guidelines for adherence to the Agent Skills Specification. Timothy Kassis 2026-01-14 09:53:20 -08:00
  • 955a36ac82 Update README.md to enhance plugin installation instructions and add management commands Timothy Kassis 2026-01-12 17:17:47 -08:00
  • e2e00231da Add support for Rowan computational platform that provides a suite of design and simulation tools for chemical R&D v2.17.0 Timothy Kassis 2026-01-12 13:22:43 -08:00
  • f086d9f499 Merge pull request #31 from shao-shuai/fix/uspto-database Timothy Kassis 2026-01-09 08:57:21 -08:00
  • 68f8f709f3 Add patentsview api key for patent search api shao-shuai 2026-01-08 22:38:59 -08:00
  • a7221bb237 Merge pull request #30 from marovole/fix/shell-command-injection-docs Timothy Kassis 2026-01-08 08:53:35 -08:00
  • b6a6d698db fix(security): replace shell=True with safe subprocess patterns in documentation marovole 2026-01-08 15:05:30 +08:00
  • 38c1560c7b Merge pull request #29 from K-Dense-AI/orion/add-k-dense-web-gif Timothy Kassis 2026-01-07 20:38:47 -08:00
  • 7232cf73a9 docs: add K-Dense Web GIF orion/add-k-dense-web-gif Haoxuan "Orion" Li 2026-01-07 17:13:23 -08:00
  • 29536568d4 Merge pull request #28 from Jacobluke-/patch-1 Timothy Kassis 2026-01-07 08:56:08 -08:00
  • 912bdc7afa Fix description formatting in SKILL.md Jacob Luke 2026-01-07 15:15:18 +08:00
  • 7942c59146 Fix typo in gget/SKILL.md description Jacob Luke 2026-01-07 15:08:58 +08:00
  • 808578ba03 Enhance README.md with detailed comparison of features between the local repo and K-Dense Web, highlighting benefits such as zero setup, cloud compute, and advanced workflows. Timothy Kassis 2026-01-06 21:01:58 -08:00
  • 2cb6f2e645 Bump version v2.16.1 Timothy Kassis 2026-01-05 18:21:49 -08:00
  • 87497a3c60 Add K-Dense Web skill v2.16.0 Timothy Kassis 2026-01-05 18:20:10 -08:00
  • ca49c8c105 Update README.md to clarify capabilities and usage instructions for Claude Code and MCP clients Timothy Kassis 2026-01-05 17:23:58 -08:00
  • 9ab5b29dc5 Merge pull request #26 from K-Dense-AI/fix-writing-skills Timothy Kassis 2026-01-05 15:47:03 -08:00
  • 90aea1b0a5 Merge branch 'main' into fix-writing-skills Timothy Kassis 2026-01-05 15:46:55 -08:00
  • 5ef0ccddc2 Clean description fields v2.15.0 Timothy Kassis 2026-01-05 14:29:10 -08:00
  • 9cb0c2f934 Disambiguate descriptions Timothy Kassis 2026-01-05 14:25:22 -08:00
  • 7fff998fe6 Fix pptx-posters SKILL.md with correct content from claude-scientific-writer Vinayak Agarwal 2026-01-05 14:11:43 -08:00
  • 15d9e4699a Update examples Timothy Kassis 2026-01-05 13:49:00 -08:00
  • e268d8db9b Writing enhancements v2.14.0 Timothy Kassis 2026-01-05 13:33:11 -08:00
  • 1d716b0375 Merge pull request #25 from K-Dense-AI/fix-writing-skills Timothy Kassis 2026-01-05 13:31:55 -08:00
  • c127b737a5 Remove extra md files from markitdown Vinayak Agarwal 2026-01-05 13:07:50 -08:00
  • 5b52a8dd23 Remove test scripts and summary files Vinayak Agarwal 2026-01-05 13:06:20 -08:00
  • 3439a21f57 Enhance citation management and literature review guidelines Vinayak Agarwal 2026-01-05 13:01:10 -08:00
  • d243a12564 Merge pull request #24 from backtrue/feature/add-nstc-support dev-writing Timothy Kassis 2026-01-05 12:38:29 -08:00
  • 70375367d6 Support for writing and executing MATLAB/Octave scripts v2.13.0 Timothy Kassis 2026-01-05 10:15:22 -08:00
  • 4427270a71 feat(research-grants): Add comprehensive Taiwan NSTC proposal support backtrue 2026-01-06 00:34:59 +09:00
  • 9827af22ad Update readme Timothy Kassis 2026-01-02 19:09:54 -08:00
  • 58a32ff246 Update readme Timothy Kassis 2026-01-02 19:09:01 -08:00
  • 8f337f1574 Clarify licensing terms in README.md to specify that while the repository is MIT licensed, individual skills may have different licenses. Added a section on individual skill licenses to ensure users understand their compliance responsibilities. Timothy Kassis 2026-01-02 13:50:33 -08:00
  • 6de317a90c Add suggestion to use K-Dense Web for complicated workflows. v2.12.0 Timothy Kassis 2026-01-02 13:27:48 -08:00
  • 805b1e1e0b Add compatibility field to some of the skills v2.11.3 Timothy Kassis 2025-12-31 15:15:59 -08:00
  • 9a89e01aba Update license metadata field v2.11.2 Timothy Kassis 2025-12-31 15:10:41 -08:00
  • 2621ee329d Add skill author v2.11.1 Timothy Kassis 2025-12-31 13:57:51 -08:00
  • 57bde764fe Added ISO 13485 certification prep skill v2.11.0 Timothy Kassis 2025-12-29 11:12:50 -08:00
  • 4fc6ac7727 Merge pull request #18 from robotlearning123/feature/neuropixels-analysis Timothy Kassis 2025-12-18 11:31:11 -08:00
  • 95a3b74b3b Move Neuropixels-Analysis to new Neuroscience category Robert 2025-12-17 11:20:00 -05:00
  • 1e00b1536e Fix SpikeInterface API compatibility in neuropixels_pipeline.py Robert 2025-12-17 11:13:09 -05:00
  • 312f18ae60 Add neuropixels-analysis skill for extracellular electrophysiology Robert 2025-12-17 11:06:28 -05:00
  • 4fb9c053f7 Merge pull request #16 from K-Dense-AI/fix-skills Timothy Kassis 2025-12-12 13:58:21 -08:00
  • 4515ca6268 Correct the versioning on marketplace.json Vinayak Agarwal 2025-12-12 11:46:28 -08:00
  • 09d9aa3bb2 Restore marketplace.json from main Vinayak Agarwal 2025-12-12 11:45:36 -08:00
  • cf1d4aac5d Update all the latest writing skills Vinayak Agarwal 2025-12-12 11:42:41 -08:00
  • d4ca5984ca Bump version v2.10.1 v2.10.0 Timothy Kassis 2025-12-12 09:21:26 -08:00
  • a643493a32 Merge pull request #15 from K-Dense-AI/add-writer-skills Timothy Kassis 2025-12-12 09:19:38 -08:00
  • c85faf039a Update marketplace.json to version 2.10.0 and reorganize scientific skills, adding new skills for citation management, clinical decision support, and research documentation while restoring previously removed skills. Vinayak Agarwal 2025-12-11 20:00:59 -08:00
  • ae60fcf620 Added all updated deep research and writing skills Vinayak Agarwal 2025-12-11 18:37:06 -08:00
  • 78331e1b37 Remove all writing skills for upcoming upgrade v2.9.0 Timothy Kassis 2025-12-07 13:54:58 -08:00
  • ab4aff4670 Update README.md to include a promotional note for k-dense.ai, enhancing visibility of advanced capabilities. Timothy Kassis 2025-12-07 13:41:35 -08:00
  • 6560f1d779 Change Flux.2-dev to flex since dev does not exist v2.8.1 Timothy Kassis 2025-12-04 14:50:30 -08:00
  • 49567890a6 Add BRENDA enzyme database v2.8.0 Timothy Kassis 2025-12-03 17:29:05 -08:00
  • ec10daba7e Merge pull request #12 from jxtse/add-brenda-database-skill Timothy Kassis 2025-12-02 20:47:18 -08:00
  • 280a53f95e Add BRENDA database skill for enzyme research and analysis Jinxiang Xie 2025-12-03 12:36:49 +08:00
  • 9347d99355 Improve generate-image description Timothy Kassis 2025-11-30 09:36:44 -05:00
  • 90de96a99b Add support for generating scientific illustrations using Nano Banan Pro and Flux.2 Pro v2.7.0 Timothy Kassis 2025-11-30 09:30:58 -05:00
  • 8d82c83a1a Merge pull request #11 from aledlie/main Timothy Kassis 2025-11-30 08:52:18 -05:00
  • 7e8deebf96 Add support for Qiskit from IBM: software stack for quantum computing and algorithms research. Build, optimize, and execute quantum workloads at scale. v2.6.0 Timothy Kassis 2025-11-30 08:46:41 -05:00
  • 7763491813 Add support for PennyLane: a cross-platform library for quantum computing, quantum machine learning, and quantum chemistry. Timothy Kassis 2025-11-30 08:27:24 -05:00
  • 16e47a1755 Add support for Cirq: library for writing, manipulating, and optimizing quantum circuits, and then running them on quantum computers and quantum simulators. Timothy Kassis 2025-11-30 08:02:58 -05:00
  • a077cee836 Add support for QuTiP: an open-source software for simulating the dynamics of open quantum systems. Timothy Kassis 2025-11-30 07:46:17 -05:00
  • 7caef7df68 Fix Reactome database nesting v2.5.1 Timothy Kassis 2025-11-30 06:28:41 -05:00
  • bf4267161f refactor: replace manual argv parsing with argparse Alyshia Ledlie 2025-11-29 01:11:21 -05:00
  • 6ac2a15e39 Add support for GeoPandas v2.5.0 Timothy Kassis 2025-11-27 18:57:26 -05:00
  • 41f272c2bd Add Plotly support Timothy Kassis 2025-11-27 18:47:08 -05:00
  • 02574ba19d Merge pull request #10 from K-Dense-AI/add_adaptyv_integration v2.4.0 Timothy Kassis 2025-11-24 19:53:28 -05:00
  • ea638c5618 Add support for Adaptyv for protein design Timothy Kassis 2025-11-24 19:52:45 -05:00
  • 8e7a791871 Merge pull request #8 from alperyilmaz/patch-1 Timothy Kassis 2025-11-23 04:54:15 -08:00
  • 3bb0ee77be updated CHEMBL function calls Alper Yilmaz 2025-11-21 12:52:30 +03:00
  • e5fc882746 Merge pull request #6 from K-Dense-AI:open_alex_integration v2.3.0 Timothy Kassis 2025-11-19 13:39:08 -08:00
  • 65b39d45d6 Add support for OpenAlex Timothy Kassis 2025-11-19 13:38:32 -08:00
  • c078c98ad2 Add Perplexity search v2.2.0 Timothy Kassis 2025-11-16 16:16:21 -08:00
  • 2e80732340 Add uv installation instructions v2.1.1 Timothy Kassis 2025-11-16 15:36:33 -08:00
  • 2fc3e6a88e Updated installation instructions for all skills to always use uv pip install Timothy Kassis 2025-11-16 15:34:52 -08:00
  • d94f21c51f Add support for fluidsim for computational fluid dynamics v2.1.0 Timothy Kassis 2025-11-13 19:46:29 -08:00
  • 19c0b390ee Merge pull request #5 from K-Dense-AI/refactor_skills v2.0.0 Timothy Kassis 2025-11-13 19:21:02 -08:00
  • 54cab8e4b5 Update readme to clarify refactoring Timothy Kassis 2025-11-13 19:20:09 -08:00
  • ad2dfc3446 Update readme Timothy Kassis 2025-11-13 19:17:42 -08:00
  • 63f257d81e Consolidate plugins Timothy Kassis 2025-11-13 18:57:02 -08:00
  • 8be6c6c307 Consolidate skills Timothy Kassis 2025-11-13 18:50:42 -08:00
  • cc99fdb57d Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally v1.80.0 Timothy Kassis 2025-11-10 10:57:05 -08:00
  • 50fdaf1b04 Add Slack link Timothy Kassis 2025-11-10 09:24:36 -08:00
  • 82663ee1de Bump version v1.70.1 Timothy Kassis 2025-11-07 09:37:59 -08:00
  • 2873d0e39d Improve the EDA skill Timothy Kassis 2025-11-07 09:37:14 -08:00
  • 0e4939147f Link to examples Timothy Kassis 2025-11-06 17:05:17 -08:00
  • 5b7081cbff Add examples Timothy Kassis 2025-11-06 17:04:04 -08:00
  • ffad3d81b0 Improve the EDA skill Timothy Kassis 2025-11-04 17:25:06 -08:00