skills/claude-scientific-skills
1
0
Fork 0
mirror of https://github.com/K-Dense-AI/claude-scientific-skills.git synced 2026-01-26 16:58:56 +08:00
Code Issues Packages Projects Releases Wiki Activity

Commit Graph

  • 1225ddecf1 Add support for both geniml and gtars v1.70.0 Timothy Kassis 2025-11-04 10:22:03 -08:00
  • 4ad4f9970f Improve the scikit-learn skill Timothy Kassis 2025-11-04 10:11:46 -08:00
  • 63a4293f1a Add support for the Denario AI scientist v1.69.0 Timothy Kassis 2025-11-03 17:04:20 -08:00
  • f124e28509 Update the PyOpenMS skill Timothy Kassis 2025-11-03 16:55:01 -08:00
  • c56fa43747 Improve the Hugging Face transformers skill Timothy Kassis 2025-11-03 16:44:15 -08:00
  • 86d8878eeb Improve the astropy skill Timothy Kassis 2025-11-03 16:34:14 -08:00
  • d57129ca3f Bump version v1.68.1 Timothy Kassis 2025-11-03 16:21:47 -08:00
  • 537edff2a1 Improve the arboreto skill Timothy Kassis 2025-11-03 16:21:26 -08:00
  • 6ddea4786e Improve the anndata skill Timothy Kassis 2025-11-03 16:09:01 -08:00
  • 094d5aa9f1 Improve the aeon skill Timothy Kassis 2025-11-03 15:59:29 -08:00
  • 862445f531 Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training. v1.68.0 Timothy Kassis 2025-11-02 14:54:16 -08:00
  • b8c4d2bae1 Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning. Timothy Kassis 2025-11-02 14:52:06 -08:00
  • 27d6ee387f Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation. Timothy Kassis 2025-11-02 14:43:20 -08:00
  • f32b3f8b42 Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python. Timothy Kassis 2025-11-02 14:30:20 -08:00
  • ed2d1c4aeb Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs. Timothy Kassis 2025-11-02 14:19:20 -08:00
  • 7e3fae3ad1 Add support to LaminDB v1.67.0 Timothy Kassis 2025-10-31 11:39:54 -07:00
  • 97c03a11e5 Add Claude Code installation instructions Timothy Kassis 2025-10-31 11:21:01 -07:00
  • b6bb261a71 Consolidate getting started Timothy Kassis 2025-10-31 09:49:48 -07:00
  • c0de4269c0 Merge pull request #3 from K-Dense-AI/orion/add-hosted-mcp Timothy Kassis 2025-10-30 16:12:15 -07:00
  • aa5018612f Update README to include quick installation instructions for Cursor users and clarify MCP server usage across various clients. Haoxuan "Orion" Li 2025-10-30 15:01:20 -07:00
  • f12f9c2904 Enhance README by adding a call to action for users to star the repository, promoting visibility and ongoing maintenance. Timothy Kassis 2025-10-28 17:57:09 -07:00
  • 55af02f2d4 Add star history Timothy Kassis 2025-10-28 17:52:44 -07:00
  • 346010a1bf Add Markitdown skill to read all sorts of documents v1.66.0 Timothy Kassis 2025-10-28 16:31:01 -07:00
  • 5b37b62147 Update README to reflect the increase in equivalent tools from 500 to 1002 Timothy Kassis 2025-10-28 15:54:00 -07:00
  • 82901e9fbe Add hypothesis generation using HypoGeniC and HypoRefine v1.65.0 Timothy Kassis 2025-10-28 12:53:43 -07:00
  • 752c32949b Add citation Timothy Kassis 2025-10-28 10:47:44 -07:00
  • 981823a71a Add ScholarEval as a thinking framework v1.64.0 Timothy Kassis 2025-10-28 10:45:34 -07:00
  • 26d4fde324 Updated skill descrtipotions to resolve possible conflicts in their use Vinayak Agarwal 2025-10-26 18:52:50 -07:00
  • 1f03feda5c Add protocols.io integration v1.63.0 Timothy Kassis 2025-10-26 11:09:03 -07:00
  • 44285238c4 Fix context initialization by using AGENTS.md instead of AGENT.md v1.62.0 Timothy Kassis 2025-10-26 10:18:45 -07:00
  • af246ac562 Revise literature review template to enhance structure and clarity, including expanded sections for authors' affiliations, review types, and detailed methodology. Update abstract format to include background, objectives, methods, results, and conclusions. Introduce new subsections for protocol registration, quality assessment, and knowledge gaps, ensuring comprehensive guidance for systematic reviews. Vinayak Agarwal 2025-10-25 23:30:34 -07:00
  • 04d528c4bc Added support for NeuroKit2 v1.61.0 Timothy Kassis 2025-10-25 21:38:31 -07:00
  • b83942845c Support for aeon for time-series analysis and machine learning Timothy Kassis 2025-10-25 21:25:50 -07:00
  • 6cefe6f4cc Add support for PyLabRobot for lab automation Timothy Kassis 2025-10-25 21:23:47 -07:00
  • a5c2ed9bb6 Add literature review skill v1.60.0 Timothy Kassis 2025-10-25 10:55:36 -07:00
  • 295370a730 Update README.md to replace downloads and workflows badges with an equivalent tools badge for improved clarity. Timothy Kassis 2025-10-25 10:38:43 -07:00
  • 4fde8cb6de Enhance README.md by adding a downloads badge to track total downloads of the project. Timothy Kassis 2025-10-24 19:41:22 -07:00
  • 564bd39835 Add support for HistoLab v1.59.0 Timothy Kassis 2025-10-24 13:41:06 -07:00
  • 7240da6e6c Add support for PathML Timothy Kassis 2025-10-24 13:40:40 -07:00
  • 1871693348 Enhance README.md with detailed instructions for various workflows, emphasizing the importance of organized output and the creation of comprehensive documentation and visualizations. Timothy Kassis 2025-10-24 09:30:56 -07:00
  • 0e03bbcf38 Update readme Timothy Kassis 2025-10-24 09:23:19 -07:00
  • ca6fd369d7 Add DrugBank access v1.57.0 Timothy Kassis 2025-10-24 09:04:43 -07:00
  • 808fa11206 Add DataCommons which enables scientists to programmatically access nodes in the Data Commons knowledge graph. Timothy Kassis 2025-10-24 09:04:27 -07:00
  • d923063309 Change license to MIT allowing commercial use! v1.56.0 Timothy Kassis 2025-10-23 20:48:01 -07:00
  • 43dc67a316 Version bump v1.55.0 Timothy Kassis 2025-10-23 10:02:31 -07:00
  • ee73143b53 Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event Timothy Kassis 2025-10-23 10:02:16 -07:00
  • b1df506eba Add support for PyHealth making healthcare AI simpler and more powerful Timothy Kassis 2025-10-23 09:50:07 -07:00
  • bb1c9f4573 Add support for PyDicom Timothy Kassis 2025-10-23 09:35:46 -07:00
  • 6cb25aea28 Add SimPy a process-based discrete-event simulation framework Timothy Kassis 2025-10-23 09:26:44 -07:00
  • 92b4e024d1 Addition of ESM, SHAP, scvi-tools...and much more! v1.54.0 Timothy Kassis 2025-10-23 09:12:41 -07:00
  • 3fbd9ba6a9 Add utility skill to get system resources Timothy Kassis 2025-10-23 09:12:01 -07:00
  • 62ddd1296c Add ESM3 and ESM C models protein models Timothy Kassis 2025-10-23 09:10:34 -07:00
  • a11ca9c100 Add sciv-tools providing models for single cell sequencing Timothy Kassis 2025-10-23 09:09:18 -07:00
  • db2cedb2fb Add SHAP for model explainability Timothy Kassis 2025-10-23 09:08:27 -07:00
  • 87a608730c Add support for bioRxiv database search and paper downloading Timothy Kassis 2025-10-23 08:51:45 -07:00
  • 0943c243bb Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway. v1.53.0 Timothy Kassis 2025-10-22 14:59:27 -07:00
  • 0b5a648e98 Add Paper2Web v1.52.0 Timothy Kassis 2025-10-22 08:50:06 -07:00
  • 77822efeed Improved Biomni support v1.51.0 Timothy Kassis 2025-10-22 08:38:06 -07:00
  • 71a3c3750f Enhance README with detailed examples for complex scientific workflows across drug discovery, bioinformatics, and clinical genomics, showcasing multi-step processes and integration of various tools. Timothy Kassis 2025-10-22 08:24:40 -07:00
  • 9584469988 Refactor release notes generation in workflow to remove version header and streamline output Timothy Kassis 2025-10-22 08:21:43 -07:00
  • 685da0082c Add automatic releases v1.50.0 Timothy Kassis 2025-10-22 08:17:56 -07:00
  • 08608e824a Use Agent.md Timothy Kassis 2025-10-21 17:35:37 -07:00
  • c67e840088 Added new skills to create claude.md files for better skill use Vinayak Agarwal 2025-10-21 15:06:34 -07:00
  • 000a45c0e9 Apply best practices Timothy Kassis 2025-10-21 12:50:07 -07:00
  • 998a514f74 Update biopython skill Timothy Kassis 2025-10-21 10:47:34 -07:00
  • 11da596765 Update Huggingface Transformer Timothy Kassis 2025-10-21 10:30:38 -07:00
  • 1a9149b089 Improve Pytorch Lightning skill Timothy Kassis 2025-10-21 10:19:15 -07:00
  • aacc29a778 Add TorchDrug Timothy Kassis 2025-10-21 10:03:00 -07:00
  • 71e1c91f12 Better adherence to recommendations Timothy Kassis 2025-10-21 09:43:34 -07:00
  • 32109101d0 Fix descriptions to adhere to character limits Timothy Kassis 2025-10-21 09:33:30 -07:00
  • 163d6b9d6b Improve docs Timothy Kassis 2025-10-21 09:13:59 -07:00
  • dc22577e2f Update README to include information about the newly released MPC server, enabling the use of Claude Skills across various clients such as ChatGPT and Google ADK. Timothy Kassis 2025-10-21 09:00:02 -07:00
  • 9641b17067 Enhance README with detailed descriptions for Seaborn, Scientific Visualization, and Scientific Writing sections, emphasizing features like dataset-oriented interfaces, automatic confidence intervals, and field-specific terminology for improved clarity and usability. Vinayak Agarwal 2025-10-21 00:22:48 -07:00
  • 6e8d1c29b9 Add Seaborn integration for enhanced statistical visualization techniques in scientific plots. Include quick start guides, common plot types, and best practices for publication-ready figures, emphasizing colorblind-safe palettes and automatic confidence intervals. Vinayak Agarwal 2025-10-21 00:16:38 -07:00
  • 02dae0f30c Enhance scientific writing resources with detailed guidelines on field-specific terminology, citation styles, figure and table requirements, and reporting standards. Include venue-specific structure expectations and writing style comparisons to aid authors in adapting their manuscripts for various journals and conferences. Vinayak Agarwal 2025-10-21 00:04:29 -07:00
  • 41f15bd29c Add scientific writing skill Timothy Kassis 2025-10-20 22:56:17 -07:00
  • 99f3b961e0 Add LatchBio integration Timothy Kassis 2025-10-20 22:42:09 -07:00
  • 16143f1167 Add USPTO and OpenTargets databases Timothy Kassis 2025-10-20 22:34:37 -07:00
  • 6e10c5e8da Update README to reflect changes in scientific packages, integrations, and workflows, including the addition of new entries and updated counts. Timothy Kassis 2025-10-20 22:19:18 -07:00
  • fd9f5abbbe Add FDA database Timothy Kassis 2025-10-20 22:14:49 -07:00
  • a317857db5 Add ClincialTrials database Timothy Kassis 2025-10-20 22:04:13 -07:00
  • 07f81f2ff3 Add integrations Timothy Kassis 2025-10-20 21:56:27 -07:00
  • ac70437180 Enhance README with new scientific integrations, updated database entries, and improved descriptions across various sections, including bioinformatics, cheminformatics, and machine learning. Timothy Kassis 2025-10-20 21:31:48 -07:00
  • 2273130f5f Add benchling Timothy Kassis 2025-10-20 21:28:25 -07:00
  • c73c256f89 Merge branch 'main' of https://github.com/K-Dense-AI/claude-scientific-skills Timothy Kassis 2025-10-20 21:05:28 -07:00
  • 4bbf646bc6 Update README to reflect an increase in unique workflows from 59 to 94 Timothy Kassis 2025-10-20 21:04:26 -07:00
  • e1506111c0 Merge pull request #1 from K-Dense-AI/orion/fix-yaml-description-colon Timothy Kassis 2025-10-20 21:02:43 -07:00
  • c2b16829f6 Update SKILL.md files to add double quotation marks for all skills, ensuring clarity and consistency across all entries. Haoxuan "Orion" Li 2025-10-20 20:51:50 -07:00
  • c0fa308af8 Enhance README with detailed contribution guidelines and expanded repository capabilities Timothy Kassis 2025-10-20 20:26:56 -07:00
  • 9ce9745de6 Add statmodels Timothy Kassis 2025-10-20 20:17:16 -07:00
  • 50b1b5e607 Add pysam Timothy Kassis 2025-10-20 19:02:16 -07:00
  • 86243b1c45 Add matchms Timothy Kassis 2025-10-20 18:10:20 -07:00
  • ee66557f21 Add Dask to Data Analysis & Visualization section in README Timothy Kassis 2025-10-20 17:50:30 -07:00
  • fac5860912 Add Dask Timothy Kassis 2025-10-20 17:47:37 -07:00
  • c7296b2661 Add PyOpenms Timothy Kassis 2025-10-20 17:26:45 -07:00
  • df81c94a7a Improve package descriptions Timothy Kassis 2025-10-20 16:19:48 -07:00
  • 04087666b7 Improve thinking skills descriptions Timothy Kassis 2025-10-20 16:05:31 -07:00
  • 00c69058c3 Improve database description for more reliable skill calling Timothy Kassis 2025-10-20 16:02:48 -07:00
  • 50507d26bb Update PubMed database description for clarity and specificity in research applications Timothy Kassis 2025-10-20 15:39:07 -07:00
  • 56de6f97ce Update README to streamline installation instructions for Claude Code and remove redundant sections Timothy Kassis 2025-10-20 13:25:39 -07:00