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- Updated SKILL.md in citation management to include best practices for identifying seminal and high-impact papers, emphasizing citation count thresholds, venue quality tiers, and author reputation indicators. - Expanded literature review SKILL.md to prioritize high-impact papers, detailing citation metrics, journal tiers, and author reputation assessment. - Added comprehensive evaluation strategies for paper impact and quality in literature_search_strategies.md, including citation count significance and journal impact factor guidance. - Improved research lookup scripts to prioritize results based on citation count, venue prestige, and author reputation, enhancing the quality of research outputs.
314 lines
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Markdown
314 lines
12 KiB
Markdown
# Medical Journal Structured Abstract Examples
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Examples of structured abstracts for NEJM, Lancet, JAMA, and BMJ showing the labeled section format expected at medical journals.
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---
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## NEJM Style (250 words max)
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### Example 1: Clinical Trial
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```
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BACKGROUND
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Sodium-glucose cotransporter 2 (SGLT2) inhibitors reduce cardiovascular
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events in patients with type 2 diabetes and established cardiovascular
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disease. Whether these benefits extend to patients with heart failure and
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reduced ejection fraction, regardless of diabetes status, is unknown.
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METHODS
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We randomly assigned 4,744 patients with heart failure and an ejection
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fraction of 40% or less to receive dapagliflozin (10 mg once daily) or
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placebo, in addition to recommended therapy. The primary outcome was a
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composite of worsening heart failure (hospitalization or urgent visit
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requiring intravenous therapy) or cardiovascular death.
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RESULTS
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Over a median of 18.2 months, the primary outcome occurred in 386 of
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2,373 patients (16.3%) in the dapagliflozin group and in 502 of 2,371
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patients (21.2%) in the placebo group (hazard ratio, 0.74; 95% confidence
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interval [CI], 0.65 to 0.85; P<0.001). A first worsening heart failure
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event occurred in 237 patients (10.0%) in the dapagliflozin group and
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in 326 patients (13.7%) in the placebo group (hazard ratio, 0.70; 95%
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CI, 0.59 to 0.83). Death from cardiovascular causes occurred in 227
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patients (9.6%) and 273 patients (11.5%), respectively (hazard ratio,
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0.82; 95% CI, 0.69 to 0.98). Effects were similar in patients with and
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without diabetes. Serious adverse events were similar between groups.
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CONCLUSIONS
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Among patients with heart failure and a reduced ejection fraction,
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dapagliflozin reduced the risk of worsening heart failure or
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cardiovascular death, regardless of the presence of diabetes.
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```
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**Key Features**:
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- Four labeled sections (BACKGROUND, METHODS, RESULTS, CONCLUSIONS)
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- Background: 2 sentences (problem + gap)
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- Methods: Study design, population, intervention, primary outcome
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- Results: Primary outcome with HR and 95% CI, key secondary outcomes
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- Conclusions: Clear, measured statement of findings
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---
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### Example 2: Observational Study
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```
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BACKGROUND
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Long-term use of proton-pump inhibitors (PPIs) has been associated with
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adverse outcomes in observational studies, but causality remains uncertain.
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The relationship between PPI use and chronic kidney disease is unclear.
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METHODS
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We conducted a prospective cohort study using data from 10,482 participants
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in the Atherosclerosis Risk in Communities study who were free of kidney
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disease at baseline. PPI use was ascertained at baseline and follow-up
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visits. The primary outcome was incident chronic kidney disease, defined
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as an estimated glomerular filtration rate less than 60 ml per minute per
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1.73 m² of body-surface area.
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RESULTS
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Over a median follow-up of 13.9 years, incident chronic kidney disease
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occurred in 56.0 per 1000 person-years among PPI users and in 42.0 per
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1000 person-years among non-users (adjusted hazard ratio, 1.50; 95%
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confidence interval [CI], 1.14 to 1.96). The association persisted after
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adjustment for potential confounders, including indication for PPI use
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and baseline kidney function. Sensitivity analyses using propensity-score
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matching yielded similar results. No association was observed for
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histamine H2-receptor antagonist use (hazard ratio, 1.08; 95% CI, 0.87
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to 1.34).
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CONCLUSIONS
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PPI use was associated with an increased risk of incident chronic kidney
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disease in this community-based cohort. These findings warrant cautious
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use of PPIs and further investigation to establish causality.
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```
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**Key Features**:
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- Appropriate hedging for observational study ("associated with")
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- Incidence rates provided (per 1000 person-years)
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- Sensitivity analyses mentioned
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- Negative control (H2-receptor antagonists)
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- Cautious conclusion acknowledging limitation
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---
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## Lancet Style (300 words max)
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### Example 3: Clinical Trial with Summary Box
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```
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BACKGROUND
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Dexamethasone has been shown to reduce mortality in hospitalized patients
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with COVID-19 requiring respiratory support. We aimed to evaluate whether
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higher doses of corticosteroids would provide additional benefit in
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patients with severe COVID-19 pneumonia.
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METHODS
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In this randomized, controlled, open-label trial conducted at 18 hospitals
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in Brazil, we assigned patients with moderate-to-severe COVID-19 (PaO2/FiO2
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≤200 mm Hg) to receive high-dose dexamethasone (20 mg once daily for 5
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days, then 10 mg once daily for 5 days) or standard dexamethasone (6 mg
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once daily for 10 days). The primary outcome was ventilator-free days
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at 28 days.
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FINDINGS
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Between June 17, 2020, and September 20, 2021, we enrolled 299 patients
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(151 assigned to high-dose dexamethasone and 148 to standard
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dexamethasone). The mean number of ventilator-free days at 28 days was
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14·2 (SD 10·8) in the high-dose group and 15·5 (SD 10·4) in the standard
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group (difference, −1·3 days; 95% CI, −3·9 to 1·3; P=0·32). There was
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no significant difference in 28-day mortality (high dose 35·8% vs
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standard 31·8%; hazard ratio 1·16; 95% CI, 0·79 to 1·70). Hyperglycemia
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requiring insulin was more frequent with high-dose dexamethasone (66·0%
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vs 53·4%; P=0·027).
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INTERPRETATION
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In patients with moderate-to-severe COVID-19 pneumonia, high-dose
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dexamethasone did not improve ventilator-free days and was associated
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with increased hyperglycemia compared with standard-dose dexamethasone.
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These findings do not support the use of high-dose corticosteroids in
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COVID-19.
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FUNDING
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Ministry of Health of Brazil.
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```
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**Key Features**:
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- Lancet uses "Findings" instead of "Results"
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- Lancet uses "Interpretation" instead of "Conclusions"
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- Includes funding statement in abstract
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- Decimal point (·) instead of period in numbers (Lancet style)
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---
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## JAMA Style (350 words max)
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### Example 4: Diagnostic Study
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```
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IMPORTANCE
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Lung cancer screening with low-dose computed tomography (CT) reduces
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mortality but identifies many indeterminate pulmonary nodules, leading
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to unnecessary invasive procedures. Improved risk prediction could
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reduce harms while preserving benefits.
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OBJECTIVE
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To develop and validate a deep learning model for predicting malignancy
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risk of lung nodules detected on screening CT.
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DESIGN, SETTING, AND PARTICIPANTS
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This retrospective cohort study included 14,851 participants with
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lung nodules from the National Lung Screening Trial (NLST) for model
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development and 5,402 participants from an independent multi-site
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validation cohort (2016-2019). Data analysis was performed from
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January to November 2022.
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EXPOSURES
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Deep learning model prediction of malignancy risk based on CT imaging.
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MAIN OUTCOMES AND MEASURES
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The primary outcome was lung cancer diagnosis within 2 years. Model
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performance was assessed by area under the receiver operating
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characteristic curve (AUC), sensitivity, specificity, and comparison
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with radiologist assessments.
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RESULTS
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In the validation cohort (median age, 65 years; 57% male), 312 nodules
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(5.8%) were diagnosed as lung cancer within 2 years. The deep learning
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model achieved an AUC of 0.94 (95% CI, 0.92-0.96), compared with 0.85
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(95% CI, 0.82-0.88) for the Lung-RADS categorization used by radiologists
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(P<0.001). At 95% sensitivity, the model achieved 68% specificity compared
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with 38% for Lung-RADS, corresponding to a 49% reduction in false-positive
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nodules requiring follow-up. The model's performance was consistent across
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subgroups defined by nodule size, location, and patient demographics.
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CONCLUSIONS AND RELEVANCE
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A deep learning model for lung nodule malignancy prediction outperformed
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current clinical standards and could substantially reduce false-positive
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findings in lung cancer screening, decreasing unnecessary surveillance
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and invasive procedures.
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```
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**Key Features**:
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- JAMA-specific sections (IMPORTANCE, OBJECTIVE, DESIGN...)
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- "Importance" section required (2-3 sentences on why this matters)
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- Detailed design section
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- "Exposures" clearly stated
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- "Main Outcomes and Measures" explicit
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---
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## BMJ Style (300 words max)
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### Example 5: Cohort Study
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```
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OBJECTIVE
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To examine the association between statin use and risk of Parkinson's
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disease in a large population-based cohort.
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DESIGN
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Prospective cohort study.
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SETTING
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UK Biobank, 2006-2021.
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PARTICIPANTS
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402,251 adults aged 40-69 years without Parkinson's disease at baseline.
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MAIN OUTCOME MEASURES
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Incident Parkinson's disease identified through hospital admissions,
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primary care records, and death certificates. Hazard ratios were
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estimated using Cox regression, adjusted for age, sex, education,
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smoking, alcohol, physical activity, body mass index, and comorbidities.
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RESULTS
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Over a median follow-up of 12.3 years, 2,841 participants developed
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Parkinson's disease (incidence rate 5.7 per 10,000 person-years).
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Statin use at baseline was not associated with incident Parkinson's
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disease (adjusted hazard ratio 0.95, 95% confidence interval 0.87 to
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1.04). Results were consistent across analyses stratified by statin
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type (lipophilic vs hydrophilic), dose, and duration of use, and in
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sensitivity analyses accounting for reverse causation. No protective
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association was observed in analyses restricted to participants with
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high cardiovascular risk or in propensity-score matched cohorts.
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CONCLUSIONS
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In this large prospective cohort, statin use was not associated with
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reduced risk of Parkinson's disease, contrary to findings from some
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previous observational studies. The null findings were robust across
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multiple sensitivity analyses. These results do not support a
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neuroprotective effect of statins against Parkinson's disease.
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WHAT IS ALREADY KNOWN ON THIS TOPIC
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Previous observational studies have yielded inconsistent results
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regarding statin use and Parkinson's disease risk.
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WHAT THIS STUDY ADDS
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This large prospective study with long follow-up found no evidence
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that statin use protects against Parkinson's disease.
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```
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**Key Features**:
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- BMJ uses abbreviated section headers
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- Includes "What is already known" and "What this study adds" boxes
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- Design, Setting, and Participants as separate sections
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- Clear Main Outcome Measures section
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---
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## Key Differences Between Journals
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| Element | NEJM | Lancet | JAMA | BMJ |
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|---------|------|--------|------|-----|
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| **Word limit** | 250 | 300 | 350 | 300 |
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| **Results label** | RESULTS | FINDINGS | RESULTS | RESULTS |
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| **Conclusions label** | CONCLUSIONS | INTERPRETATION | CONCLUSIONS AND RELEVANCE | CONCLUSIONS |
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| **Unique sections** | — | Funding in abstract | IMPORTANCE | What is known/adds |
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| **Decimal style** | Period (.) | Centered dot (·) | Period (.) | Period (.) |
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---
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## Essential Elements for All Medical Abstracts
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### Background/Context
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- Disease burden or clinical problem (1 sentence)
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- Knowledge gap or rationale for study (1 sentence)
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### Methods
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- Study design (RCT, cohort, case-control)
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- Setting (number of sites, country/region)
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- Participants (N, key inclusion criteria)
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- Intervention or exposure
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- Primary outcome with definition
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### Results
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- Number enrolled and analyzed
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- Primary outcome with effect size and 95% CI
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- Key secondary outcomes
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- P-values for primary comparisons
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- Adverse events (if applicable)
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### Conclusions
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- Clear statement of main finding
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- Appropriate hedging based on study design
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- Clinical implication (optional, 1 sentence)
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---
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## Common Mistakes in Medical Abstracts
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❌ **Missing confidence intervals**: "HR 0.75, P=0.02" → include 95% CI
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❌ **Relative risk only**: Add absolute risk reduction, NNT
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❌ **Causal language for observational studies**: "PPIs cause kidney disease"
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❌ **Overstated conclusions**: Claims exceeding evidence
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❌ **Missing sample sizes**: Always include N for each group
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❌ **Vague outcomes**: "Improved outcomes" without specific definition
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---
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## See Also
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- `medical_journal_styles.md` - Comprehensive medical writing guide
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- `venue_writing_styles.md` - Style comparison across venues
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