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https://github.com/K-Dense-AI/claude-scientific-skills.git
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All 40 references to borealBytes/opencode updated to the correct source: https://github.com/SuperiorByteWorks-LLC/agent-project Affected files: SKILL.md, all 24 diagram guides, 9 templates, issue and PR docs, plus assets/examples/example-research-report.md (new file). The example report demonstrates full skill usage: flowchart, sequence, timeline, xychart, radar diagrams — all with accTitle/accDescr and classDef colors, no %%{init}. Covers HEK293T CRISPR editing efficiency as a realistic scientific context.
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Git Graph
Back to Style Guide — Read the style guide first for emoji, color, and accessibility rules.
Syntax keyword: gitGraph
Best for: Branching strategies, merge workflows, release processes, git-flow visualization
When NOT to use: General processes (use Flowchart), project timelines (use Gantt)
Exemplar Diagram
gitGraph
accTitle: Trunk-Based Development Workflow
accDescr: Git history showing short-lived feature branches merging into main with release tags demonstrating trunk-based development
commit id: "init"
commit id: "setup CI"
branch feature/auth
checkout feature/auth
commit id: "add login"
commit id: "add tests"
checkout main
merge feature/auth id: "merge auth" tag: "v1.0"
commit id: "update deps"
branch feature/dashboard
checkout feature/dashboard
commit id: "add charts"
commit id: "add filters"
checkout main
merge feature/dashboard id: "merge dash"
commit id: "perf fixes" tag: "v1.1"
Tips
- Use descriptive
id:labels on commits - Add
tag:for release versions - Branch names should match your actual convention (
feature/,fix/,release/) - Show the ideal workflow — this is prescriptive, not descriptive
- Use
type: HIGHLIGHTon important merge commits - Keep to 10–15 commits maximum for readability
Template
gitGraph
accTitle: Your Title Here
accDescr: Describe the branching strategy and merge pattern
commit id: "initial"
commit id: "second commit"
branch feature/your-feature
checkout feature/your-feature
commit id: "feature work"
commit id: "add tests"
checkout main
merge feature/your-feature id: "merge feature" tag: "v1.0"