Robert
312f18ae60
Add neuropixels-analysis skill for extracellular electrophysiology
...
Adds comprehensive toolkit for analyzing Neuropixels high-density neural
recordings using SpikeInterface, Allen Institute, and IBL best practices.
Features:
- Data loading from SpikeGLX, Open Ephys, and NWB formats
- Preprocessing pipelines (filtering, phase shift, CAR, bad channel detection)
- Motion/drift estimation and correction
- Spike sorting integration (Kilosort4, SpykingCircus2, Mountainsort5)
- Quality metrics computation (SNR, ISI violations, presence ratio)
- Automated curation using Allen/IBL criteria
- AI-assisted visual curation for uncertain units
- Export to Phy and NWB formats
Supports Neuropixels 1.0 and 2.0 probes.
🤖 Generated with [Claude Code](https://claude.com/claude-code )
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com >
2025-12-17 11:06:28 -05:00
Timothy Kassis
78331e1b37
Remove all writing skills for upcoming upgrade
2025-12-07 13:54:58 -08:00
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49567890a6
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90de96a99b
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7e8deebf96
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2025-11-30 08:46:41 -05:00
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7763491813
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2025-11-30 08:27:24 -05:00
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a077cee836
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6ac2a15e39
Add support for GeoPandas
2025-11-27 18:57:26 -05:00
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41f272c2bd
Add Plotly support
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ea638c5618
Add support for Adaptyv for protein design
2025-11-24 19:52:45 -05:00
Timothy Kassis
65b39d45d6
Add support for OpenAlex
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c078c98ad2
Add Perplexity search
2025-11-16 16:16:21 -08:00
Timothy Kassis
d94f21c51f
Add support for fluidsim for computational fluid dynamics
2025-11-13 19:46:29 -08:00
Timothy Kassis
ad2dfc3446
Update readme
2025-11-13 19:17:42 -08:00
Timothy Kassis
cc99fdb57d
Add support for Modal so researchers can scale compute on demand for heavy computational tasks beyond running locally
2025-11-10 10:57:05 -08:00
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5b7081cbff
Add examples
2025-11-06 17:04:04 -08:00
Timothy Kassis
1225ddecf1
Add support for both geniml and gtars
2025-11-04 10:22:03 -08:00
Timothy Kassis
4ad4f9970f
Improve the scikit-learn skill
2025-11-04 10:11:46 -08:00
Timothy Kassis
63a4293f1a
Add support for the Denario AI scientist
2025-11-03 17:04:20 -08:00
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86d8878eeb
Improve the astropy skill
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094d5aa9f1
Improve the aeon skill
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Timothy Kassis
862445f531
Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training.
2025-11-02 14:54:16 -08:00
Timothy Kassis
b8c4d2bae1
Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning.
2025-11-02 14:52:06 -08:00
Timothy Kassis
27d6ee387f
Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation.
2025-11-02 14:43:20 -08:00
Timothy Kassis
f32b3f8b42
Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python.
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ed2d1c4aeb
Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs.
2025-11-02 14:19:20 -08:00
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7e3fae3ad1
Add support to LaminDB
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346010a1bf
Add Markitdown skill to read all sorts of documents
2025-10-28 16:31:01 -07:00
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82901e9fbe
Add hypothesis generation using HypoGeniC and HypoRefine
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Timothy Kassis
1f03feda5c
Add protocols.io integration
2025-10-26 11:09:03 -07:00
Timothy Kassis
04d528c4bc
Added support for NeuroKit2
2025-10-25 21:38:31 -07:00
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a5c2ed9bb6
Add literature review skill
2025-10-25 10:55:36 -07:00
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564bd39835
Add support for HistoLab
2025-10-24 13:41:06 -07:00
Timothy Kassis
ca6fd369d7
Add DrugBank access
2025-10-24 09:04:43 -07:00
Timothy Kassis
808fa11206
Add DataCommons which enables scientists to programmatically access nodes in the Data Commons knowledge graph.
2025-10-24 09:04:27 -07:00
Timothy Kassis
ee73143b53
Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event
2025-10-23 10:02:16 -07:00
Timothy Kassis
b1df506eba
Add support for PyHealth making healthcare AI simpler and more powerful
2025-10-23 09:50:07 -07:00
Timothy Kassis
bb1c9f4573
Add support for PyDicom
2025-10-23 09:35:46 -07:00
Timothy Kassis
6cb25aea28
Add SimPy a process-based discrete-event simulation framework
2025-10-23 09:26:44 -07:00
Timothy Kassis
3fbd9ba6a9
Add utility skill to get system resources
2025-10-23 09:12:01 -07:00
Timothy Kassis
0943c243bb
Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway.
2025-10-22 14:59:27 -07:00
Timothy Kassis
0b5a648e98
Add Paper2Web
2025-10-22 08:50:06 -07:00
Timothy Kassis
77822efeed
Improved Biomni support
2025-10-22 08:38:06 -07:00
Timothy Kassis
11da596765
Update Huggingface Transformer
2025-10-21 10:30:38 -07:00
Timothy Kassis
1a9149b089
Improve Pytorch Lightning skill
2025-10-21 10:19:15 -07:00
Timothy Kassis
aacc29a778
Add TorchDrug
2025-10-21 10:03:00 -07:00
Timothy Kassis
163d6b9d6b
Improve docs
2025-10-21 09:13:59 -07:00
