113 Commits

Author	SHA1	Message	Date
Timothy Kassis	1871693348	Enhance README.md with detailed instructions for various workflows, emphasizing the importance of organized output and the creation of comprehensive documentation and visualizations.	2025-10-24 09:30:56 -07:00
Timothy Kassis	0e03bbcf38	Update readme	2025-10-24 09:23:19 -07:00
Timothy Kassis	ca6fd369d7	Add DrugBank access	2025-10-24 09:04:43 -07:00
Timothy Kassis	d923063309	Change license to MIT allowing commercial use!	2025-10-23 20:48:01 -07:00
Timothy Kassis	ee73143b53	Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event	2025-10-23 10:02:16 -07:00
Timothy Kassis	b1df506eba	Add support for PyHealth making healthcare AI simpler and more powerful	2025-10-23 09:50:07 -07:00
Timothy Kassis	bb1c9f4573	Add support for PyDicom	2025-10-23 09:35:46 -07:00
Timothy Kassis	6cb25aea28	Add SimPy a process-based discrete-event simulation framework	2025-10-23 09:26:44 -07:00
Timothy Kassis	3fbd9ba6a9	Add utility skill to get system resources	2025-10-23 09:12:01 -07:00
Timothy Kassis	87a608730c	Add support for bioRxiv database search and paper downloading	2025-10-23 08:51:45 -07:00
Timothy Kassis	0943c243bb	Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway.	2025-10-22 14:59:27 -07:00
Timothy Kassis	0b5a648e98	Add Paper2Web	2025-10-22 08:50:06 -07:00
Timothy Kassis	71a3c3750f	Enhance README with detailed examples for complex scientific workflows across drug discovery, bioinformatics, and clinical genomics, showcasing multi-step processes and integration of various tools.	2025-10-22 08:24:40 -07:00
Timothy Kassis	08608e824a	Use Agent.md	2025-10-21 17:35:37 -07:00
Timothy Kassis	1a9149b089	Improve Pytorch Lightning skill	2025-10-21 10:19:15 -07:00
Timothy Kassis	aacc29a778	Add TorchDrug	2025-10-21 10:03:00 -07:00
Timothy Kassis	163d6b9d6b	Improve docs	2025-10-21 09:13:59 -07:00
Timothy Kassis	dc22577e2f	Update README to include information about the newly released MPC server, enabling the use of Claude Skills across various clients such as ChatGPT and Google ADK.	2025-10-21 09:00:02 -07:00
Vinayak Agarwal	9641b17067	Enhance README with detailed descriptions for Seaborn, Scientific Visualization, and Scientific Writing sections, emphasizing features like dataset-oriented interfaces, automatic confidence intervals, and field-specific terminology for improved clarity and usability.	2025-10-21 00:22:48 -07:00
Timothy Kassis	41f15bd29c	Add scientific writing skill	2025-10-20 22:56:17 -07:00
Timothy Kassis	99f3b961e0	Add LatchBio integration	2025-10-20 22:42:09 -07:00
Timothy Kassis	16143f1167	Add USPTO and OpenTargets databases	2025-10-20 22:34:37 -07:00
Timothy Kassis	6e10c5e8da	Update README to reflect changes in scientific packages, integrations, and workflows, including the addition of new entries and updated counts.	2025-10-20 22:19:18 -07:00
Timothy Kassis	fd9f5abbbe	Add FDA database	2025-10-20 22:14:49 -07:00
Timothy Kassis	a317857db5	Add ClincialTrials database	2025-10-20 22:04:13 -07:00
Timothy Kassis	07f81f2ff3	Add integrations	2025-10-20 21:56:27 -07:00
Timothy Kassis	ac70437180	Enhance README with new scientific integrations, updated database entries, and improved descriptions across various sections, including bioinformatics, cheminformatics, and machine learning.	2025-10-20 21:31:48 -07:00
Timothy Kassis	2273130f5f	Add benchling	2025-10-20 21:28:25 -07:00
Timothy Kassis	4bbf646bc6	Update README to reflect an increase in unique workflows from 59 to 94	2025-10-20 21:04:26 -07:00
Timothy Kassis	c0fa308af8	Enhance README with detailed contribution guidelines and expanded repository capabilities	2025-10-20 20:26:56 -07:00
Timothy Kassis	9ce9745de6	Add statmodels	2025-10-20 20:17:16 -07:00
Timothy Kassis	50b1b5e607	Add pysam	2025-10-20 19:02:16 -07:00
Timothy Kassis	86243b1c45	Add matchms	2025-10-20 18:10:20 -07:00
Timothy Kassis	ee66557f21	Add Dask to Data Analysis & Visualization section in README	2025-10-20 17:50:30 -07:00
Timothy Kassis	c7296b2661	Add PyOpenms	2025-10-20 17:26:45 -07:00
Timothy Kassis	56de6f97ce	Update README to streamline installation instructions for Claude Code and remove redundant sections	2025-10-20 13:25:39 -07:00
Timothy Kassis	bfaab6a785	Add GWAS	2025-10-20 08:56:49 -07:00
Timothy Kassis	19cbc58266	Fixe readme	2025-10-19 20:34:20 -07:00
Timothy Kassis	2141e5ab40	Remove DrugBank and TCGA entries from README database list	2025-10-19 19:33:29 -07:00
Timothy Kassis	4f46d37342	Add brainstorming skill	2025-10-19 19:29:33 -07:00
Timothy Kassis	3c71cfa82d	Add peer review	2025-10-19 19:25:08 -07:00
Timothy Kassis	9f4154a9ed	Add more databases	2025-10-19 19:16:45 -07:00
Timothy Kassis	56a8312fc9	Add HMDB	2025-10-19 19:01:24 -07:00
Timothy Kassis	1813407e4e	Add multiple scientific databases to README	2025-10-19 18:55:17 -07:00
Timothy Kassis	242f22a489	Add UniPort	2025-10-19 18:54:03 -07:00
Timothy Kassis	dd4e49670a	Add ENA	2025-10-19 18:45:58 -07:00
Timothy Kassis	4dae8c8a72	Add STRING	2025-10-19 18:38:44 -07:00
Timothy Kassis	f3bee71890	Add ClinVar	2025-10-19 18:31:14 -07:00
Timothy Kassis	e5afb5f4ba	Add COSMIC database	2025-10-19 18:22:29 -07:00
Timothy Kassis	68468a42c9	Add Document skills	2025-10-19 18:14:01 -07:00