87 Commits

Author SHA1 Message Date
Timothy Kassis
1225ddecf1 Add support for both geniml and gtars 2025-11-04 10:22:03 -08:00
Timothy Kassis
63a4293f1a Add support for the Denario AI scientist 2025-11-03 17:04:20 -08:00
Timothy Kassis
862445f531 Add support for Stable-Baselines3, a PyTorch-based library providing reliable, well-tested implementations of popular deep reinforcement learning algorithms with a simple and consistent API for research and training. 2025-11-02 14:54:16 -08:00
Timothy Kassis
b8c4d2bae1 Add support for PufferLib which is a high-performance, open-source Python toolkit that wraps complex RL environments to look like standard Gym/PettingZoo interfaces and supports massively parallel simulation (1M+ steps/sec) to accelerate deep reinforcement learning. 2025-11-02 14:52:06 -08:00
Timothy Kassis
27d6ee387f Add support for Vaex for fast, memory-efficient exploration and visualization of large tabular datasets using lazy, out-of-core computation. 2025-11-02 14:43:20 -08:00
Timothy Kassis
f32b3f8b42 Add support for SymPY for symbolic mathematics that enables algebraic manipulation, equation solving, calculus, and symbolic computation directly in Python. 2025-11-02 14:30:20 -08:00
Timothy Kassis
ed2d1c4aeb Add support for NetworkX for creating, analyzing, and visualizing complex networks and graphs. 2025-11-02 14:19:20 -08:00
Timothy Kassis
7e3fae3ad1 Add support to LaminDB 2025-10-31 11:39:54 -07:00
Timothy Kassis
97c03a11e5 Add Claude Code installation instructions 2025-10-31 11:21:01 -07:00
Timothy Kassis
b6bb261a71 Consolidate getting started 2025-10-31 09:49:48 -07:00
Haoxuan "Orion" Li
aa5018612f Update README to include quick installation instructions for Cursor users and clarify MCP server usage across various clients. 2025-10-30 15:01:20 -07:00
Timothy Kassis
f12f9c2904 Enhance README by adding a call to action for users to star the repository, promoting visibility and ongoing maintenance. 2025-10-28 17:57:09 -07:00
Timothy Kassis
55af02f2d4 Add star history 2025-10-28 17:52:44 -07:00
Timothy Kassis
346010a1bf Add Markitdown skill to read all sorts of documents 2025-10-28 16:31:01 -07:00
Timothy Kassis
5b37b62147 Update README to reflect the increase in equivalent tools from 500 to 1002 2025-10-28 15:54:00 -07:00
Timothy Kassis
82901e9fbe Add hypothesis generation using HypoGeniC and HypoRefine 2025-10-28 12:53:43 -07:00
Timothy Kassis
981823a71a Add ScholarEval as a thinking framework 2025-10-28 10:45:34 -07:00
Timothy Kassis
1f03feda5c Add protocols.io integration 2025-10-26 11:09:03 -07:00
Timothy Kassis
44285238c4 Fix context initialization by using AGENTS.md instead of AGENT.md 2025-10-26 10:18:45 -07:00
Timothy Kassis
04d528c4bc Added support for NeuroKit2 2025-10-25 21:38:31 -07:00
Timothy Kassis
a5c2ed9bb6 Add literature review skill 2025-10-25 10:55:36 -07:00
Timothy Kassis
295370a730 Update README.md to replace downloads and workflows badges with an equivalent tools badge for improved clarity. 2025-10-25 10:38:43 -07:00
Timothy Kassis
4fde8cb6de Enhance README.md by adding a downloads badge to track total downloads of the project. 2025-10-24 19:41:22 -07:00
Timothy Kassis
564bd39835 Add support for HistoLab 2025-10-24 13:41:06 -07:00
Timothy Kassis
1871693348 Enhance README.md with detailed instructions for various workflows, emphasizing the importance of organized output and the creation of comprehensive documentation and visualizations. 2025-10-24 09:30:56 -07:00
Timothy Kassis
0e03bbcf38 Update readme 2025-10-24 09:23:19 -07:00
Timothy Kassis
ca6fd369d7 Add DrugBank access 2025-10-24 09:04:43 -07:00
Timothy Kassis
d923063309 Change license to MIT allowing commercial use! 2025-10-23 20:48:01 -07:00
Timothy Kassis
ee73143b53 Add scikit-survival for survival analysis allowing users to establish connections between covariates and time of an event 2025-10-23 10:02:16 -07:00
Timothy Kassis
b1df506eba Add support for PyHealth making healthcare AI simpler and more powerful 2025-10-23 09:50:07 -07:00
Timothy Kassis
bb1c9f4573 Add support for PyDicom 2025-10-23 09:35:46 -07:00
Timothy Kassis
6cb25aea28 Add SimPy a process-based discrete-event simulation framework 2025-10-23 09:26:44 -07:00
Timothy Kassis
3fbd9ba6a9 Add utility skill to get system resources 2025-10-23 09:12:01 -07:00
Timothy Kassis
87a608730c Add support for bioRxiv database search and paper downloading 2025-10-23 08:51:45 -07:00
Timothy Kassis
0943c243bb Added full support for ToolUniverse. Claude Code can now use the tools it provide as it needs without the MCP being a gateway. 2025-10-22 14:59:27 -07:00
Timothy Kassis
0b5a648e98 Add Paper2Web 2025-10-22 08:50:06 -07:00
Timothy Kassis
71a3c3750f Enhance README with detailed examples for complex scientific workflows across drug discovery, bioinformatics, and clinical genomics, showcasing multi-step processes and integration of various tools. 2025-10-22 08:24:40 -07:00
Timothy Kassis
08608e824a Use Agent.md 2025-10-21 17:35:37 -07:00
Timothy Kassis
1a9149b089 Improve Pytorch Lightning skill 2025-10-21 10:19:15 -07:00
Timothy Kassis
aacc29a778 Add TorchDrug 2025-10-21 10:03:00 -07:00
Timothy Kassis
163d6b9d6b Improve docs 2025-10-21 09:13:59 -07:00
Timothy Kassis
dc22577e2f Update README to include information about the newly released MPC server, enabling the use of Claude Skills across various clients such as ChatGPT and Google ADK. 2025-10-21 09:00:02 -07:00
Vinayak Agarwal
9641b17067 Enhance README with detailed descriptions for Seaborn, Scientific Visualization, and Scientific Writing sections, emphasizing features like dataset-oriented interfaces, automatic confidence intervals, and field-specific terminology for improved clarity and usability. 2025-10-21 00:22:48 -07:00
Timothy Kassis
41f15bd29c Add scientific writing skill 2025-10-20 22:56:17 -07:00
Timothy Kassis
99f3b961e0 Add LatchBio integration 2025-10-20 22:42:09 -07:00
Timothy Kassis
16143f1167 Add USPTO and OpenTargets databases 2025-10-20 22:34:37 -07:00
Timothy Kassis
6e10c5e8da Update README to reflect changes in scientific packages, integrations, and workflows, including the addition of new entries and updated counts. 2025-10-20 22:19:18 -07:00
Timothy Kassis
fd9f5abbbe Add FDA database 2025-10-20 22:14:49 -07:00
Timothy Kassis
a317857db5 Add ClincialTrials database 2025-10-20 22:04:13 -07:00
Timothy Kassis
07f81f2ff3 Add integrations 2025-10-20 21:56:27 -07:00